lipidomics

Here are 75 public repositories matching this topic...

bshashikadze / diabetes-lung-omics-paper

Reproducibility repo for Shashikadze et al. "Multi-omics profiling of lungs from genetically diabetic pigs reveals reduced ALOX15 levels and impaired eicosanoid switching as mechanisms contributing to a proinflammatory milieu".

bioinformatics statistics diabetes proteomics mass-spectrometry lipidomics lung data-independent-acquisition multi-omics-integration

Updated Nov 5, 2023
Markdown

SLINGhub / RwithSLING

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RwithSLING notes

r lipidomics

Updated Sep 29, 2022
TeX

sauerkrausi / HeLanMOST

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proteomics neuron lipidomics lysosomes

Updated Jul 1, 2025
ImageJ Macro

ltor-nyulmc / Masters_Thesis_Multiomic_MG_Macrophage

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Analysis code, scripts, and data visualization from my Master's thesis focused on the multiomic integration (transcriptomics, lipidomics, spatial lipidomics) of monoglyceride responses in adipose tissue macrophages within the context of obesity.

bioinformatics rna-seq adipose-tissue transcriptomics lipidomics rna-seq-analysis lcms obesity rna-seq-pipeline macrophages multiomics-data spacial-lipidomics monoglycerides

Updated Jun 23, 2025

Khrameeva-Lab / lipidomics_analysis_2021

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The Hitchhiker’s Guide to untargeted lipidomics analysis: Practical guidelines

bioinformatics lc-ms lipidomics

Updated Oct 10, 2021
R

zybinmikhail / Thesis

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Machine Learning Based Analysis of Gene Expression and Lipid Composition of the Schizophrenia Brain

machine-learning statistics gene-expression lipidomics schizophrenia

Updated Jul 16, 2024
Jupyter Notebook

lwjohnst86 / ada.2017

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Abstract and Presentation Files for ADA 2017

r rstats lipidomics metabolic-syndrome

Updated Jun 5, 2017
R

pnnl / IonToolPack

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A software tool for omics-agnostic automated quality control of mass spectrometry data.

machine-learning quality-control proteomics metabolomics lipidomics ion-mobility-spectrometry mass-spectrometry-data data-independent-acquisition

Updated Jul 15, 2024
Python

octopode / seelipids

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Making patterns visible in complex lipidomic data

dataviz biochemistry lipidomics

Updated Apr 19, 2025
R

Hartviger / B.Sc._programs

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My B.Sc. project involves a collaboration with the M3 Lab Group at SDU. The purpose is to create a Shiny app that will be published. My code will be used in the app to visualize and analysis Metabolomics, Lipidomics data.

rstudio lipidomics lipids lipidomer

Updated Sep 29, 2024
R

SLINGhub / SLINGtools

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Facilitate lipidomics data analysis in R

r lipidomics

Updated Apr 20, 2023
R

lsmsgeneva / MsRadaR

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MsRadaR, A Tool for De-Novo Structural Elucidation of Lipids from MS/MS Spectra (EDP-CID, EAD)

mass-spectrometry lipidomics ead de-novo-structural-elucidation edp-cid double-bonds

Updated Jan 22, 2025
R

Colliton / Code-storage

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"This repository contains Python scripts for biological data analysis, including Kaplan-Meier survival analysis, volcano plots for gene expression analysis, heatmaps for immune cell infiltration in murine models treated with Pyrvinium Pamoate, and SQL queries for data extraction and preprocessing."

bioinformatics sql database biology heatmap python3 survival-analysis jupyterlab kaplan-meier lipidomics rna-seq-analysis clinical-data tumour-growth immune-infiltration mice-model pyrvinium-pamoate tumour-analysis

Updated Jul 4, 2025
Jupyter Notebook

TT2DR-StenoDiabetesCenterCopenhagen / COFstudy_Serum_MetabolomicsLipidomics

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Omics analyses of subjects born with low birth weight (LBW) and matched normal birth weight (NBW) controls. A carbohydrate overfeeding intervention study, these analysis focusing on the baseline differences between the LBW and NBW groups.

metabolomics lipidomics type2-diabetes carbohydrate-overfeeding