snp-data

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R package for the analysis of massive SNP arrays.

Efficient compression and retrieve of genotype data with integer sparse matrices

shiny shiny-apps genotype sparse-matrices snp-data

Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,

Simulation of a pair of Single Nucleotide Polymorphisms (SNPs) and associated binary response (e.g., disease status) based on real SNP data in R.

Powerful CNV calls filtering pipeline. Focused on fixed loci calling, before visual inspection.

r cnv snp-data cnv-analysis

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