10000 got error while installing MCScanX on Ubuntu 14.04 · Issue #5 · wyp1125/MCScanX · GitHub
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got error while installing MCScanX on Ubuntu 14.04 #5
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bhaveshbiotechnology opened this issue Dec 23, 2016 · 0 comments
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got error while installing MCScanX on Ubuntu 14.04 #5

bhaveshbiotechnology opened this issue Dec 23, 2016 · 0 comments

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@bhaveshbiotechnology
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I did make to install MCScanX and stuck in this problem...........please help...........
I am using corei7, ubuntu 14.04

g++ struct.cc mcscan.cc read_data.cc out_utils.cc dagchainer.cc msa.cc permutation.cc -o MCScanX
g++ struct.cc mcscan_h.cc read_homology.cc out_homology.cc dagchainer.cc msa.cc permutation.cc -o MCScanX_h
g++ struct.cc dup_classifier.cc read_data.cc out_utils.cc dagchainer.cc cls.cc permutation.cc -o duplicate_gene_classifier
g++ dissect_multiple_alignment.cc -o downstream_analyses/dissect_multiple_alignment
dissect_multiple_alignment.cc: In function ‘int main(int, char**)’:
dissect_multiple_alignment.cc:252:44: error: ‘getopt’ was not declared in this scope
while ((c = getopt(argc, argv, "g:c:o:")) != -1)
^
dissect_multiple_alignment.cc:257:32: error: ‘optarg’ was not declared in this scope
sprintf(gpath,"%s",optarg);
^
dissect_multiple_alignment.cc:269:17: error: ‘optopt’ was not declared in this scope
if (optopt!='g' || optopt!='c' || optopt!='o')
^
make: *** [mcscanx] Error 1
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@tanghaibao @bhaveshbiotechnology
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