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[NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models

Python 46 7 Updated Aug 2, 2024

UCE is a zero-shot foundation model for single-cell gene expression data

Python 209 35 Updated Feb 27, 2025

Learning meaningful representations of genes

Jupyter Notebook 19 1 Updated Jul 7, 2025

Learning meaningful representations of genes

Jupyter Notebook 9 1 Updated Oct 19, 2024

Spatial Hi-Plex Biology

Jupyter Notebook 1 1 Updated Jul 8, 2025

Creating multi-resolution embeddings and clusters from high dimensional data

Jupyter Notebook 54 11 Updated Sep 27, 2024

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

Jupyter Notebook 410 55 Updated Jun 6, 2025

Quantifying experimental perturbations at single cell resolution

Python 109 10 Updated Sep 27, 2024

Denoised Embedding Manifold Preservation

Python 9 4 Updated May 6, 2020

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

Python 9,674 1,159 Updated Oct 9, 2024

TorchCFM: a Conditional Flow Matching library

Python 1,847 147 Updated Mar 11, 2025

A natural language interface for computers

Python 59,994 5,114 Updated Apr 23, 2025

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

Python 177,045 45,892 Updated Jul 19, 2025

LLM inference in C/C++

C++ 83,227 12,401 Updated Jul 19, 2025

Python bindings for llama.cpp

Python 9,353 1,171 Updated Jul 18, 2025

Distribute and run LLMs with a single file.

C++ 22,804 1,200 Updated Jun 30, 2025

We provide a simple code snippet on how to simulate a bigger batch size when it is not directly achievable by your GPU.

Python 3 Updated Oct 22, 2023

Statistical plotting with good aesthetics.

Python 3 Updated Jul 26, 2024

Computations and statistics on manifolds with geometric structures.

Python 1,379 267 Updated May 22, 2025

PECAN: Persistent Condensation

83A5 Jupyter Notebook 9 2 Updated Sep 27, 2024

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

Jupyter Notebook 2,921 1,601 Updated Jul 1, 2025

Implementation of Graph Convolutional Networks in TensorFlow

Python 7,286 2,008 Updated Apr 14, 2023

How Powerful are Spectral Graph Neural Networks

Python 73 13 Updated Jul 26, 2023

Tools for building and manipulating graphs in Python

Python 42 16 Updated Jun 21, 2025

Learnable Geometric Scattering Network

Python 9 2 Updated Aug 19, 2024

LEarnable Geometric Scattering

Python 3 Updated Nov 17, 2022
Python 26 5 Updated Feb 21, 2025

A customizable pipeline for data extraction from MIMIC-IV.

Jupyter Notebook 242 90 Updated Jul 17, 2025

MIMIC-Extract:A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III

Jupyter Notebook 449 128 Updated Jul 18, 2024

Add a global delay to Command-Q to stop accidental app quits.

Objective-C 1,200 56 Updated Dec 28, 2020
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