Stars
Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).
VCF: Variant Call Format files are difficult to understand at first, I already had to dive into them in order to learn how to edit them, so you can use my scripts. Some of these functions already e…
Various unix and perl scripts to deal with genetics data: prepare submission files, extract results, and so. Check their "help" to see usage