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Issues: MultiQC/MultiQC

Plot updates 2024
#2407 opened Feb 29, 2024 by ewels
Open
Update template to latest Bootstrap (with dark mode)
#1698 opened Jun 1, 2022 by jfy133
Open 7
MultiQC 2024 tracker
#1784 opened Oct 30, 2022 by ewels
Open
Beta
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207 Open 1,531 Closed
207 Open 1,531 Closed
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Issues list

Qualimap module not getting correct folder depth for sample name for coverage histogram or gc distribution
#3229 opened Jun 11, 2025 by samuelmontgomery
4 tasks done
Error while running the MultiQC
#3228 opened Jun 10, 2025 by priyasamson
4 tasks done
Oops! The 'kraken' MultiQC module broke
#3227 opened Jun 10, 2025 by Ashita2619
4 tasks done
Triage module requests
#3219 opened Jun 3, 2025 by ewels
@vladsavelyev
1
Oops! The 'kallisto' MultiQC module broke...
#3218 opened Jun 2, 2025 by avantikasingh223
Multiqc sample renaming does not work on custom content
#3211 opened May 28, 2025 by RamiyapriyaS
Allow any metric in the multiqc_data.json to be added to the general stats table
#3202 opened May 20, 2025 by nh13
Custom content description missing when grouping sections
#3201 opened May 20, 2025 by Redmar-van-den-Berg
4 tasks done
Custom Content: Support Markdown custom-content
#3199 opened May 19, 2025 by ewels
Python version requirements cannot be satisfied with miniconda waiting: response Waiting for more information from user
#3195 opened May 15, 2025 by sodiumnitrate
4 tasks done
2
AI provider: Default to None and set based on available env vars ai
#3191 opened May 15, 2025 by ewels
AI summaries => support reasoning models
#3185 opened May 9, 2025 by nick-youngblut
picard => allow for use of output as sample name
#3182 opened May 8, 2025 by nick-youngblut
Add som.py module module: new
#3178 opened May 1, 2025 by jethror1
1 task done
1
Is there a way to change the "theme" for the plotly plots?
#3162 opened Apr 22, 2025 by clintval
AI Summary Custom Client Classes / Greater Flexibility
#3161 opened Apr 18, 2025 by nkuehnle
Add support for parsing fgbio CollectDuplexSeqMetrics output
#3152 opened Apr 7, 2025 by carmelinacharalambous
Add GC Bias and Coverage Distribution Plots to Picard HsMetrics Module
#3151 opened Apr 7, 2025 by carmelinacharalambous
2
10x Flex cellranger output module: enhancement
#3146 opened Apr 4, 2025 by maggiebr0wn
Add support for MEAN_ORIGINAL_QUALITY in Picard MeanQualityByCycle module: enhancement
#3142 opened Mar 31, 2025 by carmelinacharalambous
Custom Content Multi-Dataset Line Graph Dropping Samples?
#3139 opened Mar 29, 2025 by schorlton-bugseq
4 tasks done
1
Ordered Line Graph
#3138 opened Mar 28, 2025 by schorlton-bugseq
4 tasks done
1
Custom Content Ordering Oddness
#3136 opened Mar 28, 2025 by jchorl
Multiqc for ccs with strand-aware ccs_reports module: enhancement
#3126 opened Mar 21, 2025 by ludzkia
Module request: fastplong module: new
#3121 opened Mar 13, 2025 by hkaspersen
1 task done
ProTip! What’s not been updated in a month: updated:<2025-05-13.
0