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@MannLabs

Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 71 5

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 128 22

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 487 104

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 175 31

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 87 30

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 82 19

Repositories

Showing 10 of 46 repositories
  • alphakraken Public

    A fully automated data processing and analysis system for mass spectrometry experiments.

    MannLabs/alphakraken’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated May 15, 2025
  • alphapeptstats Public

    Python Package for the downstream analysis of mass-spectrometry-based proteomics data

    MannLabs/alphapeptstats’s past year of commit activity
    Jupyter Notebook 68 Apache-2.0 16 24 12 Updated May 15, 2025
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 45 Apache-2.0 4 26 5 Updated May 14, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 37 Apache-2.0 9 8 4 Updated May 14, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 71 Apache-2.0 5 18 8 Updated May 13, 2025
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 128 Apache-2.0 22 26 3 Updated May 12, 2025
  • alphashared Public

    Shared non-production code for AlphaX packages

    MannLabs/alphashared’s past year of commit activity
    Python 2 Apache-2.0 2 0 1 Updated Apr 23, 2025
  • timsrust Public
    MannLabs/timsrust’s past year of commit activity
    Rust 26 Apache-2.0 12 3 3 Updated Apr 23, 2025
  • directlfq Public

    Fast and accurate label-free quantification for small and very large numbers of proteomes

    MannLabs/directlfq’s past year of commit activity
    Jupyter Notebook 54 Apache-2.0 6 7 2 Updated Apr 17, 2025
  • Proteotoxicity Public
    MannLabs/Proteotoxicity’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Apr 16, 2025
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