Stars
The code of "Improving Deep Regression with Ordinal Entropy" in ICLR 2023
A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
Foundation Models for Genomics & Transcriptomics
Programs implementing the trio-binning genome assembly method
Tool for globally phasing diploid assembly graphs with orthogonal data
PBSIM3: a simulator for all types of PacBio and ONT long reads
A playbook for systematically maximizing the performance of deep learning models.