Stars
Test data for the load-heka-python module
PyChelator performs metal chelator calculations taking into account pH, temperature, and ionic strength
Code for reproducing "Resolving artefacts in voltage-clamp experiments with computational modelling: an application to fast sodium current recordings"
A Python package to run Lei et al. (2019) quality control on patch-clamp time-series data.
A Python package to export SynroPatch 384 data.
A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations
Curated Myokit implementations of (mostly cardiac) models
SanPy is software for whole-cell current clamp analysis.
Javascript library for defining and solving DAE equations efficiently using WebAssembly
Source code, issues, and discussions for Myokit: A tool for cardiac electrophysiology modelling and simulation
PRIMA is a package for solving general nonlinear optimization problems without using derivatives. It provides the reference implementation for Powell's derivative-free optimization methods, i.e., C…
Package to compute features of traces from action potential models
Python module for reading HEKA PatchMaster data files
Contains all simulation and analysis related to my (Alex) artifact project
Tips on figure making, plus help with Inkscape and Matplotlib.
Includes all the modeling, genetic algorithm simulations, and data analysis for the Christini Lab paper on drug cardiotoxicity screening with an optimized VC protocol
A suite of CellML files used to test validation methods
library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization
Simulations and figures for manuscript showing descriptive ability of iPSC-CM+artifact models
Chi is an open source Python package which is designed for PKPD modelling and model-informed precision dosing (MIPD).
A Multi-Physics Systems Modelling Library
"Where is Ben Nevis" presents the landscape of Great Britain as a testbed for optimisation and sampling methods.
Examples of parameter estimation in cardiac cell electrophysiology using Myokit and PINTS.