A User-Friendly Pipeline for the production of Core Genome and Concatenated Protein based Phylogenetic Trees and Protein based Comparative Genomic Analyses.
- Download the latest release and extract to a local directory.
- Use
chmod +xto make dependencies executable in Linux and OSX (dependencies should be executable by default in Windows). - Use
python GLIMPS_Pipeline.pyto run the pipeline without the GUI from the Terminal or Command Line (requires Python 2.7 or newer). - Use
sudo apt-get install python-tkto install the Tkinter module required for the GLIMPS GUI in Linux (Tkinter should be included in the default installation of Python 2.7 in OSX and Windows). - If Python is set as your default program for .py files, double click
GLIMPS_UI.pyto start the GLIMPS GUI. If not, runpython GLIMPS_UI.pyfrom the Terminal or Command Line to start the GLIMPS GUI.
python GLIMPS_Pipeline.py [options] or python GLIMPS_UI.py
Use command line argument -h to obtain a detailed list of arguments.
Coming Soon...
- Parallelized AAI calculation
- Numerous Bugfixes
- Initial Public Test Release
Mobolaji Adeolu (Department of Biochemistry and Biomedical Sciences, McMaster University)
GNU GENERAL PUBLIC LICENSE v3 Copyright (c) 2016 Mobolaji Adeolu