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Versatile Embedding Network for Understanding protein Sequences
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention. (NeurIPS 2024)
PLMSearch enables accurate and fast homologous protein search with only sequences as input
Graph Network for protein-protein interface including language model features
Large Language Models in Protein: A Comprehensive Survey
GENERator: A Long-Context Generative Genomic Foundation Model
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
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Evolutionary Scale Modeling (esm): Pretrained language models for proteins
This is an official implementation for "MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins".
A trainable PyTorch reproduction of AlphaFold 3.
Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas
Python - 100天从新手到大师
A summary of all lucidrains repositores and links to training / research approaches by LAION or other communities.