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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Python 1.6k 460

  2. Kilosort Kilosort Public

    Fast spike sorting with drift correction

    Python 525 266

  3. suite2p suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 383 253

  4. rastermap rastermap Public

    a visualization method for neural data

    Python 223 50

  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 165 64

  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

    Responses of 10,000 neurons to 2,800 natural images

    MATLAB 68 21

Repositories

Showing 10 of 23 repositories
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    MouseLand/cellpose’s past year of commit activity
    Python 1,625 BSD-3-Clause 460 52 (2 issues need help) 11 Updated May 16, 2025
  • suite2p Public

    cell detection in calcium imaging recordings

    MouseLand/suite2p’s past year of commit activity
    Jupyter Notebook 383 GPL-3.0 253 119 (1 issue needs help) 12 Updated May 14, 2025
  • Kilosort Public

    Fast spike sorting with drift correction

    MouseLand/Kilosort’s past year of commit activity
    Python 525 GPL-3.0 266 21 2 Updated May 13, 2025
  • zhong-et-al-2025 Public

    code to make figures from Zhong et al, 2025

    MouseLand/zhong-et-al-2025’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 12, 2025
  • minimodel Public

    minimodels!

    MouseLand/minimodel’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 2, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    MouseLand/MouseLand.github.io’s past year of commit activity
    CSS 0 0 0 0 Updated Apr 22, 2025
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    MouseLand/facemap’s past year of commit activity
    Python 165 GPL-3.0 64 13 1 Updated Apr 4, 2025
  • neuropop Public

    analysis tools for large-scale neural recordings

    MouseLand/neuropop’s past year of commit activity
    Python 14 GPL-3.0 2 0 0 Updated Apr 4, 2025
  • rastermap Public

    a visualization method for neural data

    MouseLand/rastermap’s past year of commit activity
    Python 223 GPL-3.0 50 9 0 Updated Apr 4, 2025
  • critical_init Public

    code for Pachitariu et al 2025

    MouseLand/critical_init’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
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