Stars
simple standalone BigDataViewer for multiple N5 (or HDF5) datasets
Code for fast deconvolution, deskewing, registration, and fusion of OPM/diSPIM/LLSM data.
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
Mistral-java-client is a client for the Mistral.ai API. It allows you to easily interact with the Mistral AI models. Currently supports all mistral chat completion, OCR and embedding models.
Segment Anything for Microscopy
Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji
Non-comprehensive list of projects and resources related to open microscopy.
An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.
A minimal dependency napari plugin giving access to scikit-image functions
A collection of tools for whole-brain data extraction
Embed a file from GitHub repository just like GitHub Gist.
MiC is an ImageJ plugin to compare segmentation masks
Heardle made using Spotify's Web API
Github Release Viewer. View your github repository release statistics.
playing with BigVolumeViewer LUTs/gamma/render
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets