Lists (6)
Stars
Be-Breeder 2.1 is a R/Shiny application to teach/learn Quantitative Genetics concepts applied to Plant Breeding
Graphical Fragment Assembly (GFA) Format Specification
NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
Pilon is an automated genome assembly improvement and variant detection tool
A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
Sequence correction provided by ONT Research
De novo assembler for single molecule sequencing reads using repeat graphs
Trinity RNA-Seq de novo transcriptome assembly
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which wil…
Bioinformatics one liners from Ming Tang
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
Python library to facilitate genome assembly, annotation, and comparative genomics
Generate an interactive dot plot from mummer or minimap alignments