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Interactive Neurodynamic Simulations App

Read the Docs

Operating System

  • Linux or macOS are officially supported by NEST.
  • Windows is not officially supported by NEST.

Setup Project

  • Install NEST

    • Version 3.6
    • Installation instructions
    • The recommended installation method is using the conda forge install within a conda environment as follows:
      • NOTE: This conda installation method will only work for Linux or macOS systems
      • Install anaconda
      • To install the latest version of NEST in a new environment called ENVVAME, run the following code in the terminal
      conda create --name ENVNAME -c conda-forge nest-simulator
      • To install a specific version of NEST, run the following code in the terminal:
      # this will install version 2.18.0
      conda create --name ENVNAME -c conda-forge nest-simulator=2.18.0=*
      • Activate your conda environment
      conda activate ENVNAME
  • Setup backend

    • environment: python 3.9+
    • install the remaining requirements within your environment as follows:
# navigate to the app location
cd NeuroApp
cd backend
# install the requirements
pip install -r requirements.txt
# run the backend
uvicorn main:app --reload
  • Setup frontend
    • Environment: node 16.14.0/16.16.0, yarn 1.22.19
    • Download node via nvm node manager
# open a new terminal window

# install nodejs
nvm install 16.16.0
nvm alias default 16.16.0
nvm use
# check node version
node -v
# navigate to the frontend and install yarn globally
cd frontend
npm install -g yarn

# install frontend dependencies
yarn
# run frontend
yarn dev

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