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Multi-purpose Rstudio binder for training events

R 4 4 Updated Feb 15, 2023

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

45 3 Updated May 21, 2020

[REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data

Groovy 138 42 Updated May 23, 2024

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Kotlin 357 80 Updated May 8, 2025

Community-provided extensions to Seurat

R 334 136 Updated Nov 22, 2024

The Leek group guide to data sharing

1 Updated May 8, 2016

Exploratory Data Analysis with R

R 68 81 Updated Nov 4, 2023

Statistical Inference via Data Science: A ModernDive into R and the Tidyverse

HTML 778 507 Updated May 19, 2025

Efficient R programming: a book

TeX 732 382 Updated Feb 27, 2025

Data Science at the Command Line

HTML 3,877 772 Updated May 3, 2024

Materials for rstudio::conf

HTML 737 393 Updated Dec 3, 2024

A python package for visualization and analysis of high-throughput flow cytometry data

Jupyter Notebook 119 44 Updated Jul 27, 2023
R 33 9 Updated Jun 6, 2025
Jupyter Notebook 10,478 17,480 Updated Aug 1, 2024
Jupyter Notebook 2 Updated Jun 28, 2018

Open source courseware for Git and GitHub

HTML 4,557 4,389 Updated Jun 1, 2025

Deep learning survival models

Python 119 43 Updated Dec 27, 2022

An interactive web application for demonstrating and using phyloseq.

HTML 60 45 Updated Jul 18, 2019

Course materials for "Introduction to Data Science with R", a video course by RStudio and O'Reilly Media

R 238 315 Updated Mar 28, 2022
Java 8 5 Updated Apr 13, 2020

global and local alignment of single cell trajectories

R 1 Updated Jan 23, 2018

Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage inference

11 4 Updated Aug 4, 2017

A tutorial in Python where all the examples teach students about biology. Written for high school students with no previous experience.

Python 19 9 Updated Aug 15, 2015

πŸ“½ "contributing to the tidyverse" from rstudio::conf(2018)

21 Updated Feb 4, 2018

R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)

R 24 18 Updated Dec 15, 2020

πŸ” An RStudio addin slash regex utility belt

R 488 27 Updated Nov 4, 2021

πŸŽ“ A collection of interactive courses for the swirl R package.

R 4,427 7,249 Updated Jan 10, 2024

A topic-centric list of HQ open datasets.

63,344 10,138 Updated Nov 13, 2024
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