8000 Andyargueasae (Andy arguease) · GitHub
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  1. chloroscan chloroscan Public

    A metagenomic workflow to recover chloroplast genomes

    HTML 4

  2. binny_Chloroscan binny_Chloroscan Public

    Forked from a-h-b/binny

    Here binny is modified to fit the database of chloroplast genome to cluster chloroplast contigs.

    Python 1

  3. COMEBin_ChloroScan COMEBin_ChloroScan Public

    Forked from ziyewang/COMEBin

    Comebin: a contrastive-learning based metagenomic binner, is engineered to do plastid MAG clustering.

    Python 1

  4. Plastid_Marker_DB_benchmark Plastid_Marker_DB_benchmark Public

    The code repository storing codes and instruction for manuscript reviewers to check the reproducibility. The code will be separated into two parts: marker gene set itself and benchmarking steps usi…

    1

  5. zoubohao/CompleteBin zoubohao/CompleteBin Public

    The binning tool with dynamic contrastive learning and deep language model

    Python 12

  6. ChloroScan_reproducibility ChloroScan_reproducibility Public

    Codes used in the ChloroScan benchmarking and data preparations.

0