8000 GitHub - ArnaoutLab/pymmunomics: Tools and utilities supporting Braun et al. 2024
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pymmunomics

Installation instructions

pip install --upgrade pip
pip install "pymmunomics @ git+https://github.com/ArnaoutLab/pymmunomics"

for developers:

pip install --upgrade pip
git clone https://github.com/ArnaoutLab/pymmunomics
cd pymmunomics
pip install -e ".[dev]"

Developers notes

Do not make changes to main branch or docs branch without reading this:

  • Make changes in separate branch and when tests pass, merge into main.

  • Every time main is updated, do the following:

    • merge main into docs
    • run sphinx (cd docs and ./build.sh)
    • push changes in docs branch to github
    • Make sure to update the version in pyproject.toml accordingly
  • Do not merge docs into main

  • Do not make changes in docs branch outside docs directory

This set-up is the best way I know at the time of this writing to keep the docs branch on a separate branch and not have it be part of the user installation.

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