Tags: B-UMMI/ReMatCh
Tags
Change minimum reads mapping quality (#28) * Remove version wget gzip * Make docker image compatible with alpine awk * Quick fix for download module * Correct parsing sequence name and length from VCF when sequence name has an equal character * Fix PubMLST missing retreived date * keep original alignment in debug mode * absent sequences in second run again * make it work with ambiguities in reference * save original header in consensus files * feat: save reference length * fix: correct reads mapping quality minimum * Update version --------- Co-authored-by: Miguel Machado <miguelpaulo.machado@biomereiux.com> Co-authored-by: Inês Mendes <cimendes@users.noreply.github.com>