Write/create/truncate prototxt when saving to fix #341 #417
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Create the output file if it doesn't exist or overwrite it if it exists with content when saving a prototxt and set permissions to owner all and group + other read.
One could overwrite a prototxt this way, but such is the peril of saving files.
This will cherry-picked to master or a new release will be made soon enough to fix the problem there.