Lists (5)
Stars
accurate LiftOver tool for new genome assemblies
A command line tool that draw plots on the terminal.
A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
missForest is a nonparametric, mixed-type imputation method for basically any type of data for the statistical software R.
The machine learning toolkit for time series analysis in Python
Tutorial materials covering model specification, diagnostics, validation, inference and simulation for multi-response phylogenetic mixed models in R.
R functions to easily create and run PhyBaSE models
Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
VLOOK™ 是优雅好用的 Typora/Markdown 主题包和增强插件。 VLOOK™ is an elegant and practical THEME PACKAGE × ENHANCEMENT PLUGIN for Typora/Markdown.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Software for painlessly estimating average nucleotide diversity within and between populations
cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequence.
An R package for predicting ploidal level from sequence data using site-based heterozygosity
merging and translating FASTA alignments into TNT, FastTree, and RAxML/IQ-Tree with indel and gene content characters
Identify and find telomeres, or telomeric repeats in a genome.
Supporting command lines for the article "Phasing or purging: tackling the genome assembly of a highly heterozygous animal species in the era of high-accuracy long reads"
rtrees: an R package to assemble phylogenetic trees from mega-trees
quickly filter fastq files by matching sequences to a set of regex patterns
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.