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Starred repositories
TADGATE is a computational tool to identify TADs in Hi-C contact map with a graph attention autoencoder.
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.
The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
Identify and find telomeres, or telomeric repeats in a genome.
TelomereSearch - identify telomeric repeats from genome assemblies
A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
Local Deep Research is an AI-powered assistant that transforms complex questions into comprehensive, cited reports by conducting iterative analysis using any LLM across diverse knowledge sources in…
Reduced Alphabet based Protein similarity Search
High-performance protein homology searc B97E h using asymmetric suffix array neighbourhood search
Possvm: find clusters of orthologs in phylogenies using species overlap & MCL
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
A curated list of awesome Bioinformatics libraries and software.
坚持分享 GitHub 上高质量、有趣实用的开源技术教程、开发者工具、编程网站、技术资讯。A list cool, interesting projects of GitHub.
GitHub最全的前端资源汇总仓库（包括前端学习、开发资源、数据结构与算法、开发工具、求职面试等）
Tandem repeat expansion detection or genotyping from long-read alignments
Prompts for our Grok chat assistant and the `@grok` bot on X.
biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
Inference of ploidy and heterozygosity structure using whole genome sequencing data