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Decide to remove "Salvia_carnea_var._punicans" and restart query open tree, so everything should be the same, except "Salvia_carnea_var._punicans" excluded, and the tree has 5213 species
Adding one more species "Salvia_carnea_var._punicans" based on file Salvia_carnea_var._punicans.csv
so now the most updated mint tree is "OPT_Mint_speciesname_BR_5214tip_Oct162018.tre" with 5214 tip on the tree.
at path: /ufrc/soltis/ahmedelbanhawy/OPT_October/OPT_Mint/tree/
for runing log please see here
Miao
In the "MRCA_183.csv", we found "Salvia_carnea" has a duplicate position, so remove: Salvia_carnea,Salvia_tortuosa,Salvia_purpurea
Then, the number of the "MRCA_183.csv" file became 182, and rename the file as "MRCA_182.csv"
and updated the tree:
5031 + 182 = 5213 tips
This tree will only containing part of species from the weird clade the rest 395 species from the weird clade, we don't have further info to position it on the tree
Miao