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Starred repositories

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Sublinear memory optimization for deep learning. https://arxiv.org/abs/1604.06174

Python 598 54 Updated Dec 27, 2019

Scaling Up Your Kernels to 31x31: Revisiting Large Kernel Design in CNNs (CVPR 2022)

Python 914 88 Updated Apr 24, 2024

DeepAlign: the protein structure analysis toolkit

Objective-C 40 8 Updated Jan 2, 2020

Attempt at reproduction of AlphaFold2

Python 93 14 Updated Oct 23, 2024

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

Python 1,608 265 Updated Oct 29, 2022

Scientific tools for Python: Numpy, Scipy, Pandas

Jupyter Notebook 1 15 Updated May 6, 2018

Tools that make working with scikit-learn and pandas easier.

Jupyter Notebook 44 10 Updated Apr 3, 2024

使用Python进行数据分析实验工具NumPy、Pandas、Matplotlib、Scikit-learn的入门介绍,使用IPython Notebook格式

Python 376 188 Updated Apr 17, 2017

Productivity Tools for Plotly + Pandas

Jupyter Notebook 3,067 676 Updated Jul 3, 2024
Python 3 Updated Apr 17, 2021

Implementation of Graph Transformer in Pytorch, for potential use in replicating Alphafold2

Python 224 18 Updated Jun 22, 2023

Open source code for AlphaFold 2.

Python 13,615 2,423 Updated Mar 18, 2025

Protein Language Model

Python 117 22 Updated Jan 15, 2024

Repository for publicly available deep learning models developed in Rosetta community

Python 115 19 Updated Sep 18, 2021

Predicting protein structure through sequence modeling

Jupyter Notebook 111 16 Updated May 4, 2020

An all-atom protein structure dataset for machine learning.

Python 353 37 Updated Mar 16, 2024

Structured Self Attention implementation in tensorflow

Python 5 1 Updated Oct 10, 2018

Jupyter widget to interactively view molecular structures and trajectories

Jupyter Notebook 89ED 873 134 Updated May 28, 2025
Jupyter Notebook 31 4 Updated Nov 14, 2020

PyTorch library of layers acting on protein representations

C++ 118 23 Updated Jun 30, 2024
Batchfile 46 5 Updated Nov 10, 2020

A fast MoE impl for PyTorch

Python 1,747 196 Updated Feb 10, 2025

LaTeX Thesis Template for Tsinghua University

TeX 1 Updated Jun 15, 2020

Models and examples built with TensorFlow

Python 77,590 45,569 Updated Jun 24, 2025

Deep learning prediction of protein residue-residue distances

Python 23 3 Updated Jun 28, 2022

Contains plotting scripts, examples, and other small scripts relevant to CCMgen and the corresponding publication.

Python 2 2 Updated Jul 4, 2018
HTML 20 10 Updated Jul 16, 2021

a modified version of the trRosetta folding protocol

Python 8 1 Updated Apr 3, 2020

收集校招污点公司或组织,帮助学弟学妹避雷。互联网不曾遗忘!

5,601 325 Updated Jun 7, 2022
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