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Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
Probabilistic cell segmentation for in situ spatial transcriptomics
Termux add-on app which adds shortcuts to commands on the home screen.
A curated list of Artificial Intelligence Top Tools
wjzhong / SnapHiC-G
Forked from HuMingLab/SnapHiCSnapHiC-G: Single nucleus analysis pipeline for Hi-C data using global background
Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.
Creating a simple Docker image to help perform comparisons for FASTQ compression
🗺️ Generate an interactive geo heatmap from your Google location data
Python package for Probe set selection for targeted spatial transcriptomics.
GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
Read-based phasing of genomic variants, also called haplotype assembly
jupyter notebooks of the analysis in ECHO paper
Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
Code to run metadomain calling on your dataset
DiffDomain is a statistically sound method for detecting differential TADs between conditions
trackc aims to produce beautiful genome tracks that are highly customizable
Repository for storing prototype functionality implementations for the BKP
Allen Institute Taxonomy building R package
improved clustering pipeline for transcriptomic data