8000 Running POSTGAP on large number of SNPs · Issue #185 · Ensembl/postgap · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content
This repository was archived by the owner on Feb 28, 2023. It is now read-only.
This repository was archived by the owner on Feb 28, 2023. It is now read-only.
Running POSTGAP on large number of SNPs #185
Open
@mohammedmsk

Description

@mohammedmsk

Hello Team,

I am trying to run POSTGAP on my GWAS summary statistics which has about 20,000 SNPs after some p-value thresholding.

The issue is that POSTGAP is extremely slow and is not finishing even after running it for days.

Could you please elaborate how to best run POSTGAP on GWAS summary statistics in an efficient way?

Many sequential REST API calls will obviously take a lot of time, is there a way to bypass these calls?

Thanks,
-Mohammed.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions

      0