8000 Use quantity name directly by TLCFEM · Pull Request #437 · FAIRmat-NFDI/pynxtools · GitHub
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Use quantity name directly #437

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Merged
merged 1 commit into from
Oct 18, 2024
Merged

Use quantity name directly #437

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14 changes: 7 additions & 7 deletions src/pynxtools/nomad/parser.py
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Original file line number Diff line number Diff line change
Expand Up @@ -234,7 +234,7 @@ def _populate_data(
"setting attribute attempt before creating quantity"
)
current.m_set_quantity_attribute(
metainfo_def, attr_name, attr_value, quantity=quantity
quantity.name, attr_name, attr_value
)
except Exception as e:
self._logger.warning(
Expand Down Expand Up @@ -308,26 +308,26 @@ def _populate_data(
try:
current.m_set(metainfo_def, field)
current.m_set_quantity_attribute(
metainfo_def, "m_nx_data_path", hdf_node.name, quantity=field
data_instance_name, "m_nx_data_path", hdf_node.name
)
current.m_set_quantity_attribute(
metainfo_def, "m_nx_data_file", self.nxs_fname, quantity=field
data_instance_name, "m_nx_data_file", self.nxs_fname
)
if field_stats is not None:
# TODO _add_additional_attributes function has created these nx_data_*
# attributes speculatively already so if the field_stats is None
# this will cause unpopulated attributes in the GUI
current.m_set_quantity_attribute(
metainfo_def, "nx_data_mean", field_stats[0], quantity=field
data_instance_name, "nx_data_mean", field_stats[0]
)
current.m_set_quantity_attribute(
metainfo_def, "nx_data_var", field_stats[1], quantity=field
data_instance_name, "nx_data_var", field_stats[1]
)
current.m_set_quantity_attribute(
metainfo_def, "nx_data_min", field_stats[2], quantity=field
data_instance_name, "nx_data_min", field_stats[2]
)
current.m_set_quantity_attribute(
metainfo_def, "nx_data_max", field_stats[3], quantity=field
data_instance_name, "nx_data_max", field_stats[3]
)
except Exception as e:
self._logger.warning(
Expand Down
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