8000 Registering superclasses. by Tanmay2028 · Pull Request #608 · FAIRmat-NFDI/pynxtools · GitHub

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Registering superclasses. #608

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Tanmay2028 wants to merge 23 commits into master from tanmay

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Tanmay2028 comm 10000 ented

The NeXusOntology_full.owl contains ontology of all NeXus definitions. Changes are made in the schema.py file such that for a given definition field, all its superclasses are extracted and stored in archive.results.eln.methods list. This will help to include ontology based search in Nomad GUI.

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RubelMozumder reviewed

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sanbrock reviewed

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src/pynxtools/nomad/__init__.py Outdated Show resolved Hide resolved

sanbrock reviewed

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src/pynxtools/nomad/schema.py Outdated Show resolved Hide resolved

sanbrock reviewed

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sanbrock reviewed

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sanbrock reviewed

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src/pynxtools/nomad/ontology_service.py Outdated Show resolved Hide resolved

sanbrock reviewed

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src/pynxtools/nomad/superclasses_server.py Outdated Show resolved Hide resolved

sanbrock reviewed

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src/pynxtools/nomad/NeXusOntology_full.owl Outdated Show resolved Hide resolved

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src/pynxtools/nomad/NeXusOntology_full.owl:Zone.Identifier Outdated Show resolved Hide resolved

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Tanmay2028 force-pushed the tanmay branch 4 times, most recently from dc52ed3 to e5969cc Compare

May 11, 2025 19:08

Tanmay2028 added 12 commits

May 15, 2025 13:44


          Register all superclasses in a list: results.eln.methods. This will h…

4638b6e

…elp to include ontology based search in Nomad GUI


          Register superclasses

c685eaa


          Searching classes with iri

a29614a


          Search superclasses with search_one functionality

5ea3ddf


          test

0149a8c


          Superclasses server to store superclasses

8e94b5e


          Renamed superclasses_server.py as ontoloy_service.py

5f0184a


          Minor changes

461191f


          Uses pynxtools nexus definitions

de9b8e0


          Update .gitignore to exclude .owl files


          Update definitions submodule to the latest commit

408a607


          Added scripts to generate owl file locally using definitions submodule

1654ad3

Tanmay2028 added 2 commits

May 15, 2025 14:02


          Readding definitions submodule

eda03b7


          Resolved conflicts from rebase

5eac081

Tanmay2028 force-pushed the tanmay branch from ad3a787 to 5eac081 Compare

May 15, 2025 12:10


          Generates owl file w.r.t latest commit hash of definitions submodule

a62d9c9

Tanmay2028 force-pushed the tanmay branch from 2fee794 to a62d9c9 Compare

May 16, 2025 07:05


          Update NeXusOntology as submodule and refactor ontology_service

5ec5964

lukaspie reviewed

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src/pynxtools/nomad/schema.py Outdated Show resolved Hide resolved

Tanmay2028 added 7 commits

May 22, 2025 00:05


          Remove obselete code block from schema.py

8ea781e


          Include NeXusOntology scripts in package and exclude from ruff

2aca650


          update nexus-version.txt

017a162


          Update NeXusOntology submodule to 99b7516

c0a66f4


          Update paths in nxdl.py, .owl and git files

aa0c599


          Update NeXusOntology submodule and format schema.py

2e85dc4


          Removed logging from ontology_service.py

d350a36

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