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A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by …

JavaScript 108 31 Updated May 14, 2025

Community dynamics metrics

R 34 8 Updated Jun 14, 2022

Code repository of the Earth Microbiome Project.

Jupyter Notebook 163 70 Updated Dec 13, 2022

OBO Organized Knowledge: Training materials for becoming an OBO engineer

Makefile 108 40 Updated May 2, 2025

Application ontology for the FNS-Cloud project. Food Nutrition Security Cloud (FNS-Cloud) has received funding from the European Union’s Horizon 2020 Research and Innovation programme (H2020-EU.3.2…

2 Updated Dec 14, 2023

This is a repository for documents and issues related to the development of interoperable food related ontologies.

24 3 Updated Jul 14, 2023

ROBOT is an OBO Tool

Java 273 75 Updated May 10, 2025

Code to accompany "Multitable Methods for Microbiome Data Integration"

R 9 3 Updated Dec 4, 2019

List of software packages for multi-omics analysis

780 173 Updated Apr 18, 2025

Publication-ready volcano plots with enhanced colouring and labeling

R 429 86 Updated Jun 12, 2024

akutils with massive updates over v1.1 to functionality and command line interface.

Shell 15 8 Updated Jun 25, 2019

microbiome R package

R 299 55 Updated Dec 7, 2024

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

R 1,582 144 Updated Aug 15, 2024

A set of R scripts for the analysis of microbial profiles

R 41 15 Updated May 20, 2024

📚 Freely available programming books

HTML 357,232 63,344 Updated May 2, 2025

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

R 1,371 619 Updated May 31, 2023

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

Python 445 202 Updated Dec 20, 2024
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