This repository stores a bunch of scripts (eg. R-scripts) that can be integrated to the analysis performed by BPGA (Bacterial Pan Genome Analysis tool, Chaudhari et al.). The scripts allow the user to repeat BPGA-analysis (in order to produce a custom output) or to perform downstream steps.
Each script is paired with a template output.
- 1-pan-core_plot: Produce a custom Pan/Core plot.
- 2-COG-distribution_plot: Plot the distribution of the COG categories in the core-, accessory- and unique-genome.
🚧 REPO UNDER CONSTRUCTION 🚧 👩💻