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@Gaius-Augustus

Gaius-Augustus

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  1. BRAKER BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Perl 409 87

  2. Augustus Augustus Public

    Genome annotation with AUGUSTUS

    C++ 304 113

  3. GALBA GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…

    Perl 144 5

  4. Tiberius Tiberius Public

    Tiberius is a deep learning gene finder.

    Python 60 7

  5. TSEBRA TSEBRA Public

    Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Python 47 5

  6. MakeHub MakeHub Public

    Fully automated generation of UCSC assembly hubs

    Python 34 4

Repositories

Showing 10 of 20 repositories
  • Tiberius Public

    Tiberius is a deep learning gene finder.

    Gaius-Augustus/Tiberius’s past year of commit activity
    Python 60 MIT 7 15 0 Updated May 23, 2025
  • Diatom_annotation_scripts Public

    Helper scripts to prepare a functionally decorated BRAKER output file for upload to NCBI Genomes

    Gaius-Augustus/Diatom_annotation_scripts’s past year of commit activity
    Python 0 MIT 1 0 0 Updated May 21, 2025
  • learnMSA Public

    Learning and Aligning Large Protein Families with support of protein language models.

    Gaius-Augustus/learnMSA’s past year of commit activity
    Jupyter Notebook 24 MIT 5 5 0 Updated May 10, 2025
  • varus-braker Public

    Pipeline combining raw genome-data and VARUS.bam (or RNA-seq data) and run BRAKER3 or BRAKER2

    Gaius-Augustus/varus-braker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 10, 2025
  • GALBA Public

    GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.

    Gaius-Augustus/GALBA’s past year of commit activity
    Perl 144 5 11 1 Updated Jan 28, 2025
  • BRAKER Public

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    Gaius-Augustus/BRAKER’s past year of commit activity
    Perl 409 87 179 (3 issues need help) 2 Updated Jan 23, 2025
  • Augustus Public

    Genome annotation with AUGUSTUS

    Gaius-Augustus/Augustus’s past year of commit activity
    C++ 304 113 161 6 Updated Jan 6, 2025
  • webaugustus Public
    Gaius-Augustus/webaugustus’s past year of commit activity
    Groovy 0 0 0 0 Updated Dec 8, 2024
  • clamsa Public Forked from liemonade/clamsa

    ClaMSA (Classify Multiple Sequence Alignments).

    Gaius-Augustus/clamsa’s past year of commit activity
    Python 13 2 4 (1 issue needs help) 0 Updated Nov 21, 2024
  • TSEBRA Public Forked from LarsGab/TSEBRA

    TSEBRA: Transcript Selector for BRAKER

    Gaius-Augustus/TSEBRA’s past year of commit activity
    Python 47 7 12 0 Updated Nov 13, 2024
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