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nxf-components Public
Developmental Nextflow DSL2 components
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hic_qc Public
Forked from phasegenomics/hic_qcA (very) simple script to QC Hi-C data.
Python GNU Affero General Public License v3.0 UpdatedJun 16, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJun 16, 2025 -
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pytest2nf-test Public
Converts a Nextflow component pytest to nf-test
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nf-shard Public
Forked from gluonfield/nf-shardNextflow runs monitoring and organisation UI
TypeScript MIT License UpdatedJun 12, 2025 -
nf-modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedJun 10, 2025 -
nf-launcher Public
Forked from MemVerge/nf-launcherMemVerge MMBatch and MMCloud Launcher GUI codebase
Vue Apache License 2.0 UpdatedJun 2, 2025 -
snakemake-float Public
Forked from MemVerge/snakemake-floatMM-Cloud Snakemake integration software
Python UpdatedMay 28, 2025 -
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plugins Public
Forked from nextflow-io/pluginsNextflow plugins index repository
UpdatedMay 24, 2025 -
nf-float Public
Forked from MemVerge/nf-floatMemVerge Netflow Plugin
Groovy Apache License 2.0 UpdatedMay 24, 2025 -
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genepal Public
Forked from Plant-Food-Research-Open/genepalA Nextflow pipeline for consensus, phased and pan-genome annotation
Nextflow MIT License UpdatedMay 14, 2025 -
methylseq Public
Forked from nf-core/methylseqMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Nextflow MIT License UpdatedApr 30, 2025 -
py_fasta_validator Public
Forked from linsalrob/py_fasta_validatorA Python extension of the fasta validator
Python MIT License UpdatedApr 30, 2025 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedMar 13, 2025 -
RSmag Public
Forked from Pranjal-Bioinfo/RSmagAssembly and binning of metagenomes
Nextflow MIT License UpdatedFeb 4, 2025 -
isoseq Public
Forked from nf-core/isoseqGenome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
Nextflow MIT License UpdatedFeb 2, 2025 -
trimmomatic-parallel-nf Public
A Nextflow pipeline to run test run Trimmomatic split -> trim -> merge approach for greater parallel performance
Nextflow UpdatedJan 23, 2025 -
rchiro Public
Common R Functions for Statistical Analysis at The New Zealand College of Chiropractic
R MIT License UpdatedJan 18, 2025 -
assemblyqc Public
Forked from Plant-Food-Research-Open/assemblyqcA NextFlow pipeline for evaluating assembly quality.
Nextflow MIT License UpdatedJan 16, 2025 -
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EDTA Public
Forked from oushujun/EDTAA Nextflow Implementation of Extensive de-novo TE Annotator (EDTA)
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detect-nf-test-changes Public
Forked from adamrtalbot/detect-nf-test-changesIdentify changes in Nextflow repo for CI testing
Python MIT License UpdatedNov 30, 2024 -
genomeqc Public
Forked from nf-core/genomeqcCompare the quality of multiple genomes, along with their annotations.
Nextflow MIT License UpdatedNov 27, 2024 -
nf-core-tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedSep 3, 2024 -
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prepngs Public
A pipeline to pre-process raw NGS data for downstream reuse across various pipelines
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seqinspector Public
Forked from nf-core/seqinspectorQC pipeline to inspect your sequences
Nextflow MIT License UpdatedJun 27, 2024
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