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Cecilia Public
usearCh basEd ampliCon pIpeLine for Illumina dAta
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Demultiplex-USEARCH Public
Short pipeline to quickly demultiplex illumina amplicon data
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DADAprep Public
Prepare your illumina reads before DADA2 pipeline
Shell MIT License UpdatedJul 9, 2024
BacFlux Public
Forked from iLivius/BacFluxA workflow for bacterial short reads assembly, QC, annotation, and more.
GAAP-BI Public
Genome Assembly and Annotation Pipeline for Bacteria Illumina
Bash-For-Bioinformatics Public
Usefull bash script and tricks to play with sequences
TagAnalysis Public
Forked from GLBRC-TeamMicrobiome/TagAnalysisRepo for 16S and ITS workflows
GAAP-BP Public
Genome Assembly and Annotation Pipeline for Bacteria Pacbio
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Rcode-for-Microbiome Public
Scripts for analyzing microbiome data
Amplicon-Pipelines-hpcc Public
ITS and 16S bioinformatic pipiliens to run on HPCC at Michigan State University
Intro-to-rnaseq-hpc-O2 Public
Forked from hbctraining/Intro-to-rnaseq-hpc-O2This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
Students_Modules_PLP847 Public
Student repo bioinfo code, homework and assignments