8000 Fix 1133 - update qualification report filepath by mattroumaya · Pull Request #1135 · Gilead-BioStats/gsm · GitHub
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Fix 1133 - update qualification report filepath #1135

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Merged
merged 2 commits into from
Apr 5, 2023
Merged

Fix 1133 - update qualification report filepath #1135

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38ce670
update QualificationWorkflow.Rmd
mattroumaya Apr 4, 2023
3077853
fix 1133
mattroumaya Apr 5, 2023
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3 changes: 2 additions & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,8 @@ Authors@R: c(
person("Spencer", "Childress", email="spencer.childress@gilead.com", role = c("aut")),
person("Li", "Ge", role = c("aut")),
person("Colleen", "McLaughlin", email="colleen.mclaughlin@atorusresearch.com", role = c("aut")),
person("Chelsea", "Dickens", email="chelsea.dickens@atorusresearch.com", role = c("aut"))
person("Chelsea", "Dickens", email="chelsea.dickens@atorusresearch.com", role = c("aut")),
person("Maya", "Gans", email="maya.gans@atorusresearch.com", role = c("aut"))
)
URL: https://github.com/Gilead-BioStats/gsm
BugReports: https://github.com/Gilead-BioStats/gsm/issues
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1 change: 1 addition & 0 deletions man/gsm-package.Rd
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6 changes: 2 additions & 4 deletions vignettes/articles/QualificationWorkflow.Rmd
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Expand Up @@ -150,11 +150,9 @@ Using the specifications, test cases, and test code outlined above the qualifica
An overview of the qualification test results is presented as a table, with one row for each function that has been tested. The results are presented as a series of columns for the number of tests, number of passing tests, number of failing tests, and number of skipped tests.

```{r}
spec_list <- list.files(here::here('tests', 'testqualification', 'qualification'), pattern = ".R")
spec_list <- list.files(here::here('tests', 'testqualification', 'qualification'), pattern = ".R", full.names = TRUE)
spec_list <- spec_list[-1]
spec_list <- spec_list[1:16]
# spec_list <- spec_list[1:15]
spec_list <- paste0("~/gsm/tests/testqualification/qualification/", spec_list)

scrape <- map_df(spec_list, function(x) {
testResultsRaw <- testthat::test_file(x, reporter = testthat::ListReporter, package = "gsm") %>%
as_tibble()
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0