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seek Public template
Forked from seek4science/seekFor finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
Ruby Other UpdatedNov 29, 2022 -
Scripts Public
Miscellaneous scripts, very much WIP and not intended for anyone else to use.
Python MIT License UpdatedNov 8, 2022 -
Populationsgenomik Public
Repo for the lab in the courses 1BG508 and 1BG512
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1MB335 Public
Repository for developing the new labs for 1MB335
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oneliners_and_scripts Public
Forked from UU-Human-Evolution/oneliners_and_scriptsMIT License UpdatedNov 8, 2021 -
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AdmixTools Public
Forked from DReichLab/AdmixToolsTools test whether admixture occurred and more
C UpdatedJul 28, 2020 -
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NF_FineStructure Public
A nextflow wrapper for running FineStructure
Nextflow MIT License UpdatedNov 15, 2019 -
Dockerfiles Public
A collection of dockerfiles I've made of software
MIT License UpdatedJul 6, 2018 -
rfmix Public
Forked from slowkoni/rfmixRFMIX - Local Ancestry and Admixture Inference Version 2
C++ UpdatedJun 27, 2018 -
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MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedApr 13, 2018 -
NGI-RNAseq Public
Forked from SciLifeLab/NGI-RNAseqRNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Groovy MIT License UpdatedMar 20, 2018 -
standalone_scripts Public
Forked from NationalGenomicsInfrastructure/standalone_scriptsRepository to store standalone scripts that do not belong to any bigger package or repository
Python MIT License UpdatedMar 19, 2018 -
TACA Public
Forked from NationalGenomicsInfrastructure/TACATool for the Automation of Cleanup and Analyses
Python MIT License UpdatedMar 6, 2018 -
NGI-RNAfusion Public archive
Forked from nf-core/rnafusionOld initial repo of the pipeline, main repo here:
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genomics-status Public
Forked from NationalGenomicsInfrastructure/genomics-statusTornado server for tracking samples at NGI Stockholm
JavaScript MIT License UpdatedMar 1, 2018 -
flowcell_parser Public
Forked from NationalGenomicsInfrastructure/flowcell_parserCollection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output
Python MIT License UpdatedJan 10, 2018 -
scilifelab_epps Public
Forked from NationalGenomicsInfrastructure/scilifelab_eppsA collection of Genologics Clarity LIMS EPPs used at Scilifelab.
Python UpdatedNov 29, 2017 -
ngi_pipeline Public
Forked from NationalGenomicsInfrastructure/ngi_pipelineCode driving the production pipeline at SciLifeLab
Python UpdatedNov 20, 2017 -
maxulysse.github.io Public
Forked from maxulysse/maxulysse.github.ioMy own jekyll personnal website
CSS MIT License UpdatedNov 15, 2017 -
Publications Public
Forked from ScilifelabDataCentre/PublicationsSimple web-based publications reference database system.
Python MIT License UpdatedOct 23, 2017 -
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MultiQC_TestData Public
Forked from MultiQC/test-dataTest data for MultiQC. See https://github.com/ewels/MultiQC
HTML MIT License UpdatedAug 25, 2017 -
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MultiQC_NGI Public
Forked from NationalGenomicsInfrastructure/MultiQC_NGIMultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
Python MIT License UpdatedJul 3, 2017 -
irma-provision Public
Forked from NationalGenomicsInfrastructure/irma-provisionAnsible playbooks for provisioning NGI pipeline and related sw
Shell UpdatedMay 22, 2017 -
NGI-NextflowDocs Public
Forked from SciLifeLab/NGI-NextflowDocsCommon documentation for National Genomics Infrastructure pipelines built with Nextflow
Groovy MIT License UpdatedDec 22, 2016 -
ngi_visualizations Public
Forked from NationalGenomicsInfrastructure/ngi_visualizationsNext-Gen Sequencing Visualisation Scripts.
Perl UpdatedNov 25, 2016
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