Stars
MiniFold: Simple, Fast and Accurate Protein Structure Prediction
Modelling protein conformational landscape with Alphafold
This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
Making Protein folding accessible to all!
Implementation of Axial attention - attending to multi-dimensional data efficiently
CLASP - Contrastive Language-Aminoacid Sequence Pretraining
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.