8000 Juke34 (Jacques Dainat) · GitHub
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content
View Juke34's full-sized avatar
:octocat:
🇸🇪 🇫🇷 🇦🇹
:octocat:
🇸🇪 🇫🇷 🇦🇹
114 followers · 67 following

Achievements

Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: QuickdrawAchievement: Galaxy BrainAchievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: QuickdrawAchievement: Galaxy BrainAchievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Block or report Juke34

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Juke34/README.md

Research engineer in Bioinformatics IRD at Montpellier France

🇦🇹 🇫🇷 🇸🇪

GitHub Juke34 Twitter: jacquesdainat Mastodon: jacquesdainat

Now Playing — Spotify 🎧

spotify-github-profile

   
   

:octocat: Personal

  • 🚀 I love developing workflows and coding
  • 🗨️ Ask me anything about:
    • Bioinformatics
    • Annotation, Assembly, Epitranscriptomics
    • Reproducibility
    • Nextflow (and pipeline in general)
    • GFF/GTF file formats
    • tools that I developed or in which I participated
  • 🚂 I'm a curious person and I like to help.
  • ✨ I like 🪴 🏞️ and DIY

Tools (I developed or participated)

Teaching

< 8000 div class="markdown-heading" dir="auto">

Conda recipes

I have been involved in the following recipes: RepeatModeler, RepeatMasker, Guessmylt, AGAT, EDTA, Recon, LTR_retriever, Ninja, blast+ (rpsbproc), fingerprintscan, cath-tools, sfld, InterProScan, gaas, gepard, TEsorter, RapGreen, ninja-nj, Craq, IPK, etc.

Cheat sheets and reviews

See here

Awesomeness

Tutorials

Others

🧰 Languages, Technologies, and Tools

terminal logo linux macos

---

⚡ Recent Activity

  1. 🗣 Commented on #539 in NBISweden/AGAT
  2. 🎉 Merged PR #37 in Juke34/AliNe
  3. 🗣 Commented on #540 in NBISweden/AGAT
  4. 💪 Opened PR #37 in Juke34/AliNe
  5. ❗️ Opened issue #1 in Transipedia/kmerator

Snake animation

Pinned Loading

  1. AliNe AliNe Public

    Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

    Nextflow 17 3

  2. awesome-awesomeness-bioinformatics awesome-awesomeness-bioinformatics Public

    A list of awesome awesomeness related to bioinformatics and associated fields

    40 4

  3. NBISweden/AGAT NBISweden/AGAT Public

    Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

    Perl 501 58

  4. NBISweden/EMBLmyGFF3 NBISweden/EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 16

  5. fix-anaconda-licensing-issues fix-anaconda-licensing-issues Public

    Conda anaconda license https://juke34.github.io/fix-anaconda-licensing-issues/en/

    2 1

  6. NBISweden/pipelines-nextflow NBISweden/pipelines-nextflow Public

    A set of workflows written in Nextflow for Genome Annotation.

    Nextflow 45 18

0