Lists (26)
Academic Programming 📝
Reading, writing, citing in code45 repositories
AWS 🌥
26 repositories
C++
6 repositories
Cryo-EM
electron cryogenic microscopy3 repositories
Docker 🐳
9 repositories
Economics
1 repository
Genomics
Adapter trimming, quality-control, assembly, annotation, WGS, phylogenetics, etc.33 repositories
Go
3 repositories
Julia 🟣🔴🟢
27 repositories
LaTeX
1 repository
Machine & Deep Learning 🧠
92 repositories
🔬🔭 McPherson Lab Tools
20 repositories
Microbiome 🐛
metagenomics, microbial community profiling, etc.30 repositories
Molecular docking 💊
8 repositories
Molecular Dynamics (MD) and conformational ensembles
cryo-EM ensemble dynamics, time-resolved x-ray crystallography, alphafold2 heterogenous reconstruction, etc.10 repositories
Protein Folding
AlphaFold, OpenFold, ColabFold, etc.9 repositories
🐍 Python
110 repositories
R 🏴☠️
64 repositories
Rust 🏭
24 repositories
Scientific programming
97 repositories
SQL
7 repositories
Statistical programming
28 repositories
Structural Biology
9 repositories
Transcriptomics
RNA sequencing, single-cell RNA sequencing12 repositories
Virology 🦠
3 repositories
Website Development
7 repositories
Starred repositories
snakemake pipeline for creating trees from sequence sets
Templates for reproducible economics projects
Your AI second brain. Self-hostable. Get answers from the web or your docs. Build custom agents, schedule automations, do deep research. Turn any online or local LLM into your personal, autonomous …
Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, Mistral Small 3.1 and other large language models.
A pandoc LaTeX template to convert markdown files to PDF or LaTeX.
Graphical diagnostics for pharmacometric models
A curated collection of links for economists
This repository hosts the code behind the online book, Coding for Economists.
A curated list of awesome personal websites
A curated list of awesome actions to use on GitHub
Introduction to Machine Learning Systems
A complete alternative for Overleaf with VSCode + Web + Git Integration + Copilot + Grammar & Spell Checker + Live Collaboration Support. Based on GitHub Codespace and Dev container.
AI orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data…
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Easily generate information-rich, publication-quality tables from R
MGnify genome analysis pipeline
Amazon Q, CodeCatalyst, Local Lambda debug, SAM/CFN syntax, ECS Terminal, AWS resources
📄 Awesome CV is LaTeX template for your outstanding job application
🌊 Julia software for fast, friendly, flexible, ocean-flavored fluid dynamics on CPUs and GPUs
Positron, a next-generation data science IDE
Speech-to-text, text-to-speech, speaker diarization, speech enhancement, and VAD using next-gen Kaldi with onnxruntime without Internet connection. Support embedded systems, Android, iOS, HarmonyOS…