Lists (1)
Stars
Interface for AutoDock, molecule parameterization
(Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
(Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina
Single cell transcriptomics analyses in the striatum of patients with OUD
Pipe-friendly Framework for Basic Statistical Tests in R
A package to help convert different single-cell data formats to each other
Repository for Glioblastoma EEL-FISH data and code
Methods to discover gene programs on single-cell data
R package implementation of Milo for testing for differential abundance in KNN graphs
Scripts and Jupyter Notebooks for Joost, Annusver et al. 2020 (Cell Stem Cell)
Tools and methods for analysis of single cell assay data in R
NMF: A Flexible R package for Nonnegative Matrix Factorization
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
🚦 Run Picard on BAM files and collate 90 metrics into one file.
Check strandedness of RNA-Seq fastq files
Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data
Data analysis for the paper "Single cell transcriptomics of human epidermis identifies basal stem cell transition states" in Nature Communications.
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Preprocessing workflow for ATAC-seq and ChIP-seq data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics