10000 KalinNonchev (Kalin Nonchev) · GitHub
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Achievements

Achievement: StarstruckAchievement: YOLOAchievement: Pull Sharkx2

Achievements

Achievement: StarstruckAchievement: YOLOAchievement: Pull Sharkx2

Highlights

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Organizations

@ratschlab @kipoi

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KalinNonchev/README.md

👋 Feel free to reach out to me about any project!

I am happy to chat about research or anything else. Find my email and other ways to reach me on my website!

We will be known forever by the tracks we leave - Dakota Indians

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  1. gnomAD_DB gnomAD_DB Public

    This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

    Python 44 10

  2. ratschlab/DeepSpot ratschlab/DeepSpot Public

    DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images

    Jupyter Notebook 31 5

  3. ratschlab/aestetik ratschlab/aestetik Public

    AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge

    Python 12

  4. kipoi/kipoiseq kipoi/kipoiseq Public

    Standard set of data-loaders for training and making predictions for DNA sequence-based models.

    Python 81 13

  5. kipoi/kipoi kipoi/kipoi Public

    Kipoi's model zoo API

    Jupyter Notebook 236 42

  6. mclustpy mclustpy Public

    Model-based clustering based on parameterized finite Gaussian mixture models. Models are estimated by EM algorithm initialized by hierarchical model-based agglomerative clustering. The optimal mode…

    Python 9 1

0