8000 Kevnie (Kevin Nielsen) / Starred · GitHub
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  • Uppsala University
  • Uppsala, Sweden

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Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

R 142 29 Updated Feb 11, 2025

C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data

Shell 9 Updated May 16, 2025

r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)

Shell 67 19 Updated Dec 21, 2023

Source for the QIIME 2 Framework (Q2F).

Python 509 249 Updated Jul 9, 2025

Accurate sample inference from amplicon data with single nucleotide resolution

R 509 151 Updated Jul 8, 2025

Open-source usearch

C++ 114 15 Updated Jun 16, 2024

A robust and fast clustering method for amplicon-based studies

C++ 135 23 Updated Mar 7, 2025

Versatile open-source tool for microbiome analysis

C++ 707 128 Updated Jul 9, 2025

geteduroam Linux client

Go 40 5 Updated Jun 3, 2025

A tool for plotting CAFE5 gene family expansion/contraction result

Python 31 3 Updated Sep 22, 2023
JavaScript 1,029 95 Updated May 3, 2021

Course in Metabarcoding

HTML 3 Updated Apr 23, 2025

Pop!_OS Shell

TypeScript 5,100 281 Updated Jul 11, 2025

Automatically exported from code.google.com/p/figtree

Java 427 113 Updated Jun 25, 2025

An unofficial userspace driver for HID++ Logitech devices

C++ 3,731 275 Updated Sep 28, 2024

Version 5 of the CAFE phylogenetics software

C++ 134 25 Updated Feb 12, 2025

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

C++ 116 37 Updated Apr 7, 2021

alignment and assembly free

C 14 4 Updated May 29, 2023

Web site for www.py4e.com and source to the Python 3.0 textbook

JavaScript 2,980 1,813 Updated Jul 13, 2025

A curated list of awesome ggplot2 tutorials, packages etc.

1,673 180 Updated Jul 13, 2025

ggplot geoms with pattern fills

R 375 18 Updated Jun 24, 2025

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

R 553 49 Updated May 11, 2025

An implementation of the Grammar of Graphics in R

R 6,727 2,094 Updated Jul 7, 2025

Quickly search, compare, and analyze genomic and metagenomic data sets.

Python 510 84 Updated Jul 8, 2025

A feature-rich command-line audio/video downloader

Python 118,697 9,402 Updated Jul 12, 2025

Database of Starship Elements in Fungi

Python 4 Updated Jul 9, 2025

starfish: a modular toolkit for giant mobile element annotation

Perl 30 6 Updated Dec 12, 2024

A grammar of graphics for comparative genomics

R 686 69 Updated Jul 7, 2025
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