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This repo contains a JupyterLab notebook allowing individual SNPs to be filtered from the UKB genotyping data. A few approaches to filtering are provided, including options to filter by individual …

Jupyter Notebook 17 1 Updated Aug 21, 2023

Highly specific clustering of T cell receptor CDR3s

Python 43 29 Updated Jun 21, 2022

Ultrafast TCR clustering algorithm based on geometric isometry

HTML 67 31 Updated Oct 16, 2024

CUT&RUN and CUT&Tag data processing and analysis

Shell 109 57 Updated Mar 4, 2025
HTML 25 27 Updated Jan 23, 2023

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

R 85 36 Updated Sep 1, 2023
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