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Stars
Single-cell analysis in Python. Scales to >100M cells.
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
Deep learning framework for SV calling and genotyping
A curated list of awesome Bioinformatics libraries and software.
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Open-source bioinformatics components for Dash
Tools for working with linked-read sequencing (10X Genomics) data.
Open source tools and papers for structural variant analysis.
Bioinformatics Workbook repository
NOVOPlasty - The organelle assembler and heteroplasmy caller
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
software tools for haplotype assembly from sequence data
Official code repository for GATK versions 4 and up
Tools of stLFR(Single Tube Long Fragment Reads) data analysis v1.1
Interim data for the Darwin Tree of Life Project