8000 PierreBoyeau (Pierre Boyeau) / Starred · GitHub
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RNA-seq aligner

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Biological foundation modeling from molecular to genome scale

Jupyter Notebook 1,374 168 Updated Feb 26, 2025
Jupyter Notebook 107 28 Updated Apr 24, 2024

A tiling window manager for macOS based on binary space partitioning

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Multi-resolution Variational Inference

Python 4 Updated Oct 9, 2024

A package for statistically rigorous scientific discovery using machine learning. Implements prediction-powered inference.

Python 239 18 Updated May 19, 2025

Creating figures and animations for multi-channel images with a focus on microscopy.

Jupyter Notebook 76 5 Updated Dec 16, 2024

Creating microfilm figures with napari screenshots

Python 2 Updated Dec 12, 2023

A statistical toolkit for scientific discovery using machine learning

Jupyter Notebook 76 6 Updated Jul 10, 2024
Python 1 2 Updated May 26, 2025

A template for standard compliant snakemake-workflows

Python 96 37 Updated May 21, 2025

poetry install GitHub Action

JavaScript 7 2 Updated Mar 15, 2023

Cookiecutter template for scverse

Python 78 12 Updated May 27, 2025
R 4 1 Updated Sep 21, 2021

Multi-resolution Variational Inference

Python 22 8 Updated Mar 31, 2025
Jupyter Notebook 203 99 Updated Dec 11, 2023

A python port of the glmnet package for fitting generalized linear models via penalized maximum likelihood.

Python 266 58 Updated Jul 24, 2024

An API Client package to access the APIs for NBA.com

Python 2,943 619 Updated May 19, 2025

An open source AutoML toolkit for automate machine learning lifecycle, including feature engineering, neural architecture search, model compression and hyper-parameter tuning.

Python 14,198 1,816 Updated Jul 3, 2024

Graph Neural Network Library for PyTorch

Python 22,403 3,823 Updated May 30, 2025

HyPhy: Hypothesis testing using Phylogenies

HyPhy 232 70 Updated May 29, 2025

Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.

Python 47 7 Updated Jan 20, 2025

A Collection of Variational Autoencoders (VAE) in PyTorch.

Python 7,178 1,133 Updated Mar 21, 2025

Implementation of the MIWAE method for deep generative modelling of incomplete data sets.

Jupyter Notebook 41 9 Updated Mar 16, 2024

Pytorch implementation of the Power Spherical distribution

Jupyter Notebook 74 12 Updated Jul 21, 2024

An interactive explorer for single-cell transcriptomics data

JavaScript 685 134 Updated May 14, 2025

Multi-sample multi-group scRNA-seq analysis tools

R 192 35 Updated May 9, 2025

Adaptive Experimentation Platform

Python 2,492 329 Updated May 29, 2025
Jupyter Notebook 19 3 Updated Sep 18, 2019
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