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This is the official codebase for methylGPT : a foundation model for the DNA methylome.
Lightweight coding agent that runs in your terminal
No Code Web Data Extraction Platform • Turn Websites To APIs & Spreadsheets In Minutes
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
a long read simulator that can imitate many types of read problems
GTEx & TOPMed data production and analysis pipelines
EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
An Interpretable Multi-View Representation Learning framework based on Graph Convolutional Network specifically designed for cancer gene prediction
Functional genomics and genome-wide association studies
A suite of tools for detecting expansions of short tandem repeats
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
A minimap2 frontend for PacBio native data formats
Metagenomic sequence data analysis pipeline
A gap-closing software tool that uses long reads to enhance genome assembly.
Using R language in microbiome analysis
A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data