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Analysis of Paired-Tag datasets

C++ 42 16 Updated Jan 19, 2024

本项目将《动手学深度学习》(Dive into Deep Learning)原书中的MXNet实现改为PyTorch实现。

Jupyter Notebook 18,879 5,433 Updated Oct 14, 2021
Python 3 Updated May 28, 2025

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Python 158 64 Updated Dec 8, 2022

A Python Dirichlet Multinomial Mixture Model.

Python 9 Updated Mar 25, 2023

Bayesian Data Analysis demos for Python

Jupyter Notebook 1,016 301 Updated Sep 11, 2023

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Jupyter Notebook 27,445 7,923 Updated Jun 25, 2024

Deep Unsupervised Clustering with Gaussian Mixture Variational Autoencoders

Lua 213 52 Updated Mar 4, 2020

Spatial omics analysis toolbox

R 307 105 Updated May 27, 2025

DAGs with NO TEARS: Continuous Optimization for Structure Learning

Python 628 137 Updated May 17, 2024

An index of algorithms for learning causality with data

7 4 Updated Feb 25, 2020

Realistic in silico generation and augmentation of single cell RNA-seq data using Generative Adversarial Neural Networks

Python 83 26 Updated May 27, 2024

PyTorch implementations of Generative Adversarial Networks.

Python 17,032 4,098 Updated Jun 18, 2024
C++ 92 23 Updated Mar 5, 2023
Python 309 67 Updated Dec 20, 2021

BEELINE: evaluation of algorithms for gene regulatory network inference

Python 187 56 Updated May 30, 2025

Fast, flexible and easy to use probabilistic modelling in Python.

Python 3,450 592 Updated Mar 6, 2025

Some custom dataset examples for PyTorch

Python 867 116 Updated Apr 8, 2020
Jupyter Notebook 37 10 Updated May 26, 2025

Build your neural network easy and fast, 莫烦Python中文教学

Jupyter Notebook 8,309 3,106 Updated Mar 23, 2023

Deep probabilistic analysis of single-cell and spatial omics data

Python 1,385 390 Updated Jun 4, 2025

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

R 38 12 Updated Nov 16, 2021

Deep count autoencoder for denoising scRNA-seq data

Python 260 71 Updated Mar 21, 2024

Python package for dimension reduction of high-dimensional biological data.

Python 16 5 Updated May 23, 2018
Python 99 29 Updated Oct 1, 2024

Simple PyTorch Tutorials Zero to ALL!

Python 3,922 1,198 Updated Mar 23, 2024
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