8000 apLCMS: input collections by xtrojak · Pull Request #269 · RECETOX/galaxytools · GitHub
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apLCMS: input collections #269

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Merged
merged 5 commits into from
Jun 16, 2022
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xtrojak
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@xtrojak xtrojak commented Jun 14, 2022

Passing the input collections was implemented incorrectly, which made it impossible to use the apLCMS steps in workflows. The new implementation in this PR should enable this.

Note that from now on, only collections can be passed as an input to the tools (not possible to pass separate files as inputs
).

Close #268

@hechth
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hechth commented Jun 15, 2022

@xtrojak with execution failing outside of tests you mean with planemo serve for example?

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xtrojak commented Jun 16, 2022

@xtrojak with execution failing outside of tests you mean with planemo serve for example?

Actually it works fine, it was my bad.

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hechth commented Jun 16, 2022

I think it is fine to only pass collections - I mean you can pass a collection with a single file, which is fine.

@xtrojak xtrojak marked this pull request as ready for review June 16, 2022 09:26
@xtrojak xtrojak requested review from hechth and martenson June 16, 2022 09:26
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works well, thanks for the adjustments

@martenson martenson merged commit 699355c into RECETOX:master Jun 16, 2022
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apLCMS: incorrect input collections handling
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