This project gives a framework for simulating chains of bacteria being attacked by a phage invasion. The code has been used in the manuscript "On phage adsorption to bacterial chains" by Rasmus Skytte Eriksen, Kim Sneppen and Namiko Mitarai currently available as a preprint on BioRxiv (https://doi.org/10.1101/2020.06.10.144675).
The scripts assume that 1) you have a connected CUDA device and 2) you are running linux.
To reproduce the data and figures, go to the folder "cpp" and run the following:
make
This work is published with an Creative Commons Attribution Share Alike 4.0 licence (cc-by-sa-4.0)
This work is based on the repository located at : https://github.com/RasmusSkytte/GrowingMicrocolonyProtection