- Shiny App (R Package) - A Shiny-based interactive visualization tool provided as an R package.
Install the R package from the provided tar.gz file in the repository:
install.packages("remotes")
remotes::install_local("IsoRankershiny_1.0.tar.gz", dependencies = TRUE)After installation, set up an environment variable ISORANKER_OUTPUT_DIR, which is the path to the IsoRanker Output/browser/separated_results directory where the separated_results (tsv files) reside.
In the R console:
Sys.setenv(ISORANKER_OUTPUT_DIR = "IsoSeq_smk/results/Output/browser/separated_results/")Then, launch the Shiny app using:
IsoRankershiny::run_app()Feel free to contribute or report issues via GitHub! 🚀