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SCP Public
Forked from zhanghao-njmu/SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
R GNU General Public License v3.0 UpdatedMay 21, 2024 -
HLCA_reproducibility Public
Forked from LungCellAtlas/HLCA_reproducibilityThis repository contains all code used for the Human Lung Cell Atlas project.
Jupyter Notebook MIT License UpdatedJun 20, 2023 -
NEO2IS_ITHS Public
Forked from RH-LUO/NEO2IS_ITHSR GNU General Public License v3.0 UpdatedMar 5, 2023 -
awesome-chatgpt-prompts-zh Public
Forked from PlexPt/awesome-chatgpt-prompts-zhChatGPT 中文调教指南。各种场景使用指南。学习怎么让它听你的话。
MIT License UpdatedFeb 24, 2023 -
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Galeano-Nino-Bullman-Intratumoral-Microbiota_2022 Public
Forked from FredHutch/Galeano-Nino-Bullman-Intratumoral-Microbiota_2022Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
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workshop-epigenomics-RTDs Public
Forked from NBISweden/workshop-epigenomics-RTDsworkshop website on readthedocs
UpdatedOct 14, 2022 -
Prostate_Context_Paper Public
Forked from hiraksarkar/Prostate_Context_PaperJupyter Notebook UpdatedOct 8, 2022 -
dna-seq-mtb Public
Forked from snakemake-workflows/dna-seq-mtbA flavor of https://github.com/snakemake-workflows/dna-seq-varlociraptor preconfigured for molecular tumor boards
Python MIT License UpdatedOct 4, 2022 -
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atac-seq-pipeline Public
Forked from ENCODE-DCC/atac-seq-pipelineENCODE ATAC-seq pipeline
Python MIT License UpdatedAug 1, 2022 -
rna-seq-pipeline Public
Forked from ENCODE-DCC/rna-seq-pipelinePython MIT License UpdatedJul 20, 2022 -
ReductionWrappers Public
Forked from milescsmith/ReductionWrappersR wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
R BSD 3-Clause "New" or "Revised" License UpdatedJun 22, 2022 -
curatedPCaData Public
Forked from Syksy/curatedPCaDataCurated Prostate Cancer Data R-package / pipelines / workspaces
R GNU General Public License v3.0 UpdatedJun 14, 2022 -
chip-seq-pipeline2 Public
Forked from ENCODE-DCC/chip-seq-pipeline2ENCODE ChIP-seq pipeline
Python MIT License UpdatedJun 13, 2022 -
SurvBenchmark_package Public
Forked from SydneyBioX/SurvBenchmark_packagesurvival benchmark
R Apache License 2.0 UpdatedMay 28, 2022 -
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nextflow-tutorial Public
Forked from seqeralabs/nextflow-tutorialNextflow training material for introductory tutorial
Nextflow MIT License UpdatedMay 13, 2022 -
st_spot_detector Public
Forked from SpatialTranscriptomicsResearch/st_spot_detectorA web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.
JavaScript Other UpdatedApr 28, 2022 -
transcriptutorial Public
Forked from saezlab/transcriptutorialThis is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
HTML GNU General Public License v3.0 UpdatedMar 24, 2022 -
fgsea Public
Forked from alserglab/fgseaFast Gene Set Enrichment Analysis
R Other UpdatedMar 21, 2022 -
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multisurv Public
Forked from luisvalesilva/multisurvMultimodal deep learning model for long-term cancer survival prediction
Jupyter Notebook MIT License UpdatedMar 1, 2022 -
Emergent_Laws_in_scRNA-seq_Data Public
Forked from SilviaLazzardi/Emergent_Laws_in_scRNA-seq_DataCode to reproduce the statistical data analysis of Mouse Cell Atlas and Tabula Muris compendium proposed in the paper "Emergent statistical laws in single-cell transcriptomic data" .
Jupyter Notebook GNU General Public License v3.0 UpdatedFeb 28, 2022 -
neoantigenML Public
Forked from yujijun/neoantigenMLThis is an neoantigens filtering repository by machine learning method
R UpdatedFeb 23, 2022 -
scCODA Public
Forked from theislab/scCODAA Bayesian model for compositional single-cell data analysis
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedFeb 21, 2022 -
METANET-analysis Public
Forked from WangLabHKUST/METANET-analysisAnalysis and figure code from Jiang et al.
MATLAB GNU General Public License v3.0 UpdatedFeb 20, 2022 -
mMCP-counter Public
Forked from cit-bioinfo/mMCP-counterMurine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
R GNU General Public License v3.0 UpdatedFeb 4, 2022
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